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Lysosomes
  • Clague, M. J. I Hammond. D. E. 2006. Membrane traffic: catching the lysosome express. Curr. Biol. 16: R416-R418.
  • DeDuve, C. 2005. The lysosome turns fifyt. Nat. Cell Biol. 7: 847-849.
  • Dell'Angelica, E. C. 2004. The building BLOC(k)s of lysosomes and related organelles. Curr. Opin. Cell Biol. 16: 458-464.
  • Futerman, A. H. & van Meer, G. 2004. The cell biology of lysosomal storage disorders. Nat. Rev. Cell Mol. Biol. 5: 554-565.
  • Holt, O. J., Gallo, F. & Griffiths, G. M. 2006. Regulation secretory lysosomes. J. Biochem. 140: 7-12.
  • Stinchcombe, J., Bossi, G. & Griffiths, G. M. 2004. Linking albinism and immunity: The secrets of secretory lysosomes. Science 305: 55-59.
Autophagy
  • Cuervo, A. M. 2004. Autophagy: in sickness and in health. Trends Cell Biol. 14: 70-77.
  • Cuervo, A. M. 2004. Autophagy: Many paths to the same end. Mol. Cell. Biochem. 263: 55-72.
  • Dröge, W. 2004. Autophagy and aging — importance of amino acid levels. Mech. Aging Dev. 125: 161-168.
  • Edinger, A. L. & Thompson, C. B. 2004. Death by design: apoptosis, necrosis and autophagy. Curr. Opin. Cell Biol. 16: 663-669.
  • Farré, J.-C. & Subramani, S. 2004. Peroxisome turnover by microperxophagy: an autophagy-related process. Trends. Cell Biol. 14: 515-523.
  • Juhasz. G. & Neufeld, T. P. 2006. Autophagy: A forty-year search for a missing membrane source. PLOS Biol. 4: 01610164.
  • Klionsky, D. J. 2005. The molecular machinery of autophagy: unanswered questions. J. Cell Sci. 118: 7-18.
  • Levine, B. 2005. Eating oneself and uninvited guests: Autophagy-related pathways in cellular defense. Cell 120: 159-162.
  • Lockshin, R. A. & Zakeri, A. 2004. Apoptosis, autophage, and more. Int. J. Biochem. Cell Biol. 36: 2405-2419.
  • Majeski, A. E. & Dice, J. F. 2004. Mechanisms of chaperone-mediated autophagy. Int. J. Bioche01m. Cell Biol. 36: 2435-2444.
  • Marx, J. 2006. Autophagy: Is it cancer's friend of foe? Science 312: 1160-1161.
  • Massy, A., Kiffin, R. & Cuervo, A. M. 2004. Pathophysiology of chaperone-mediated autophagy. Int. J. Biochem. Cell Biol. 36: 2420-2434.
  • Meijer, A. J. & Codogno, P. 2004. Regulation and role of autophagy in mammalian cells. Int. J. Biochem. Cell Biol. 36: 2445-2462.
  • Mijaljica, D., Prescott, M. & Devenish, R. J. 2006. Endoplasmic reticulum and Golgi complex: Contributions to, and turnover by, autophagy. Traffic 7: 1590-1595.
  • Ohsumi, Y. & Mizushima, N. 2004. Two ubiquitin-like conjugation systems essential for autophagy. Sem. Cell Dev. Biol. 15: 231-236.
  • Reggiori, F. & Klionsky, D. J. 2005. Autophagosomes: biogenesis from scratch? Curr. Opin. Cell Biol. 17: 415-422.
  • Terman, A. & Brunk, U. T. 2004. Aging as a catabolid malfunction. Int. J. Biochem. Cell Biol. 36: 2365-2375.
  • Yoshimori, T. 2007. Autophagy: Paying Charon's toll. Cell 128: 833-836.
  • Yoshimori, T. & Klionsky, D. J. 2007. Eating the endoplasmic reticulum: quality control by augtophagy. Trends Cell Biol. 17: 279-285.
Proteasomes & Exosomes
  • Amerik, A. Y. & Hochstrasser, M. 2004. Mechanism and function of deubiquitinating enzymes. Biochim. Biophys. Acta 1695: 189-207.
  • Bajorek, M. & Glickman, M. H. 2004. Keepers at the final gates: regulatory complexes and gating of the proteasome channel. Cell. Mol. Life Sci. .61: 1579-1588.
  • Baker, S. P. & Grant, P. A. 2005. The proteasome: Not just degrading anymore. Cell 123: 361-363.
  • Bekkiwsm D. S. & Tyers, M. 2004. Chemical genetics hits "reality." Science 306: 67-68.
  • Collins, G. A. & Tansey, W. P. 2006. The proteasome: a utility tool for transcription. Curr. Opin. Genet. Dev. 16: 197-202.
  • Couzin, J. 2005. The ins and outs of exosomes. Science 308: 1862-1863.
  • d'Azzo, A., Bongiovanni, A. & Nastasi, T. 2005. E3 ubiquitin ligases as regulators of membrane protein trafficking and degradation. Traffic 6: 426-441.
  • Elsasser, S. & Finley, D. 2005. Delivery of ubiquitinated substrates to protein-unfolding machines. Nat. Cell Biol. 7: 742-749.
  • Esser, C., Alberti, S. & Höhfekd. 2004. Cooperation of molecular chaperones with the ubiquitin/proteasome system. Biochim. Biophys. Acta 1695: 171-188.
  • Glickman, M. H. & Raveh, D. 2005. Proteasome plasticity. FEBS Lett. 579: 3214-3223.
  • Hartmann-Petersen, R. & Gordon, C. 2004. Proteins interacting with the 26S proteasome. Cell. Mol. Life Sci. 61: 1589-1595.
  • Heinemeyer, W., Ramos, P. C. & Dohmen, R. J. 2004. The ultimate nanoscale mincer: assembly, structure and active sites of the 20S proteasome core.Cell. Mol. Life Sci. .61: 1562-1578.
  • Hilt, W. 2004. Targets of programmed destruction: a primer to regulatory proteolysis in yeast. Cell. Mol. Life Sci. 61: 1615-32.
  • Hoyt M. A.& Coffino, P. 2004. Ubiquitin-free routes into the proteasome. Cell. Mol. Life Sci. .61: 1596-1600.
  • Lorentzen, E. & Conti, E. 2006. The exosome and the proteasome: Nano-compartments for degradation. Cell 125: 651654.
  • Maupin-Furlow, J.A., Gil, M.A., . Karadzic, I.M, Kirkland, P.A. & C.J. Reuter. 2004. Proteasomes: Perspectives from the Archaea. Front. Biosci. 9: 1743-1758.
  • McClellan, A. J., Ta,. S., Kaganovich, D. & Frydman, J. 2005. Protein quality control: chaperones culling currupt conformations. Nat. Cell Biol. 7: 736-741.
  • Miller, J & Gordon, C. 2005. The regulation of proteasome degradation by multi-ubiquitin chain binding proteins. FEBS Lett. 579: 3224-3230.
  • Pickart, C. M. & Cohen, R. E. 2004. Proteasomes and their kin: proteases in the machine age. Nat. Rev. Mol. Cell Biol. 5: 177-187.
  • Pickart, C. M. & Eddins, M. J. 2004. Ubiquitin: structures, functions, mechanisms. Biochim. Biophys. Acta 1695: 55-72.
  • Pines, J. & Lindon, C. 2005. Proteolysis: anytime, any place, anywhere? Nat. Cell Biol. 7: 731-735.
  • Rose, I. 2005. Ubiquitin at Fox Chase (Nobel Lecture). Angew. Chem. Int. Ed. 44: 5927-5931.
  • Shubtani, T. & Kliosky, D. J. 2004. Autophagy in health and disease: A double-edged sword. Science 306: 990-995.
  • Van Niel, G., Porto-Carreiro, I., Simoes, S. & Raposo, G. 2006. Exosomes: A common pathway for a specialized function. J. Biochem. 140: 13-21.
  • Von Arnim, A. G. & Schwechheimer, C. 2006. Life id degrading — Thanks to some zomes. Mol. Cell 23: 621-629.
  • Von Mikecz, A. 2006. The nuclear ubiquitin-proteasome system. J. Cell Sci. 119: 1977-1984.
  • Walters, K. J., Goh, A. M., Wang, Q., Wagner, G. & Howley, P. M. 2004. Ubiquaitin family proteins and their relationship to the proteasome: a structural perspective. Biochim. Biophys. Acta 1695: 73-87.
  • Wójcik, C. & DeMartino, G. N. 2004. Intracellular localization of proteasomes. Int. J. Biochem. Cell Biol. 35: 579-589.
  • Wolf , D. H. 2004. From lysosome to proteasome: the power of yeast in the dissection of proteinase function in cellular regulation and waste disposal. Cell. Mol. Life Sci. .61: 1601-1614.
  • Wolf, D. H. & Hilt, W. 2004. The proteasome: a proteolytic nanomachine of cell regulation and waste disposal. Biochim. Biophys. Acta 1695: 19-31.
  • Raijmakers, R., Schilders, G. & Pruijn, G. J. M. 2004. The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm. Eur. J. Cell Biol. 83: 175-173.
Plant Vacuoles
  • Hatsugai, N., Kuroyanbagi, M., Nishimura, M. & Hara-Nishimura, I. 2006. A cellular suicide strategy of plants: vacuole-mediated cell death. Apoptosis 11: 905-911.
Updated September 9, 2007